4RYL Transferase date Dec 15, 2014
title Human Protein Arginine Methyltransferase 3 In Complex With 1 Isoquinolin-6-Yl-3-[2-Oxo-2-(Pyrrolidin-1-Yl)Ethyl]Urea
authors A.Dong, E.Dobrovetsky, H.U.Kaniskan, M.Szewczyk, Z.Yu, M.S.Eram, X K.Schmidt, X.Luo, M.Dai, F.He, I.Zang, Y.Lin, S.Kennedy, F.Li, W.Te D.Smil, S.J.Min, M.Landon, J.Lin-Jones, X.P.Huang, B.L.Roth, M.Sc P.Atadja, D.Barsyte-Lovejoy, C.Bountra, A.M.Edwards, C.H.Arrows P.J.Brown, K.Zhao, J.Jin, M.Vedadi, Structural Genomics Consort
compound source
Molecule: Prmt3 Protein
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prmt3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-V2r-Prar2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Lic
symmetry Space Group: P 43 21 2
R_factor 0.186 R_Free 0.232
length a length b length c angle alpha angle beta angle gamma
70.691 70.691 173.559 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 3ZG, UNX enzyme

Primary referenceA Potent, Selective and Cell-Active Allosteric Inhibitor of Protein Arginine Methyltransferase 3 (PRMT3)., Kaniskan HU, Szewczyk MM, Yu Z, Eram MS, Yang X, Schmidt K, Luo X, Dai M, He F, Zang I, Lin Y, Kennedy S, Li F, Dobrovetsky E, Dong A, Smil D, Min SJ, Landon M, Lin-Jones J, Huang XP, Roth BL, Schapira M, Atadja P, Barsyte-Lovejoy D, Arrowsmith CH, Brown PJ, Zhao K, Jin J, Vedadi M, Angew Chem Int Ed Engl. 2015 Feb 27. doi: 10.1002/anie.201412154. PMID:25728001
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (4ryl.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 4RYL
  • CSU: Contacts of Structural Units for 4RYL
  • Structure Factors (1308 Kb)
  • Retrieve 4RYL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RYL from S2C, [Save to disk]
  • Re-refined 4ryl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RYL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RYL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4RYL, from MSDmotif at EBI
  • Fold representative 4ryl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ryl_A] [4ryl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4RYL
  • Community annotation for 4RYL at PDBWiki (http://pdbwiki.org)

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