5E1T Protein Binding date Sep 30, 2015
title Crystal Structure Of Traf1 Traf Domain
authors H.H.Park, C.M.Kim
compound source
Molecule: Tnf Receptor-Associated Factor 1
Chain: A, B, C
Fragment: Unp Residues 220-416
Synonym: Traf Protein, Epstein-Barr Virus-Induced Protein 6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Traf1, Ebi6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.211 R_Free 0.262
length a length b length c angle alpha angle beta angle gamma
75.352 79.404 108.982 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
A, C, B

Primary referenceCrystal structure of TRAF1 TRAF domain and its implications in the TRAF1-mediated intracellular signaling pathway., Kim CM, Choi JY, Bhat EA, Jeong JH, Son YJ, Kim S, Park HH, Sci Rep. 2016 May 6;6:25526. doi: 10.1038/srep25526. PMID:27151821
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • Biological Unit Coordinates (5e1t.pdb1.gz) 193 Kb
  • CSU: Contacts of Structural Units for 5E1T
  • Structure Factors (309 Kb)
  • Retrieve 5E1T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E1T from S2C, [Save to disk]
  • Re-refined 5e1t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5E1T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5E1T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5e1t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e1t_C] [5e1t_A] [5e1t_B] [5e1t]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5E1T
  • Community annotation for 5E1T at PDBWiki (http://pdbwiki.org)

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