1CCZ Glycoprotein date Mar 02, 1999
title Crystal Structure Of The Cd2-Binding Domain Of Cd58 (Lymphoc Function-Associated Antigen 3) At 1.8-A Resolution
authors S.Ikemizu, L.M.Sparks, P.A.Van Der Merwe, K.Harlos, D.I.Stuart, E S.J.Davis
compound source
Molecule: Protein (Cd58)
Chain: A
Fragment: Cd2-Binding Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
symmetry Space Group: P 32 2 1
R_factor 0.202 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.430 116.430 51.520 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand NAG enzyme
related structures by homologous chain: 1CI5
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the CD2-binding domain of CD58 (lymphocyte function-associated antigen 3) at 1.8-A resolution., Ikemizu S, Sparks LM, van der Merwe PA, Harlos K, Stuart DI, Jones EY, Davis SJ, Proc Natl Acad Sci U S A 1999 Apr 13;96(8):4289-94. PMID:10200255
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1ccz.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 1CCZ
  • CSU: Contacts of Structural Units for 1CCZ
  • Likely Quarternary Molecular Structure file(s) for 1CCZ
  • Retrieve 1CCZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CCZ from S2C, [Save to disk]
  • View 1CCZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CCZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CCZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ccza1, region A:1-93 [Jmol] [rasmolscript] [script source]
        - Domain d1ccza2, region A:94-171 [Jmol] [rasmolscript] [script source]
  • Fold representative 1ccz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ccz] [1ccz_A]
  • SWISS-PROT database: [P19256]
  • Domain organization of [LFA3_HUMAN] by SWISSPFAM
  • Domain found in 1CCZ: [IG ] by SMART
  • Other resources with information on 1CCZ
  • Community annotation for 1CCZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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