1CI5 Immune System date Apr 07, 1999
title Glycan-Free Mutant Adhesion Domain Of Human Cd58 (Lfa-3)
authors Z.Y.J.Sun, V.Dotsch, M.Kim, J.Li, E.L.Reinherz, G.Wagner
compound source
Molecule: Protein (Lymphocyte Function-Associated Antigen 3
Chain: A
Fragment: Adhesion Domain
Synonym: 1dcd58-6m
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Cell Surface
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet11a
Expression_system_plasmid: Pet11a-1dcd58x6
Expression_system_gene: 1dcd58x6
methodSolution NMR
related structures by homologous chain: 1CCZ
Primary referenceFunctional glycan-free adhesion domain of human cell surface receptor CD58: design, production and NMR studies., Sun ZY, Dotsch V, Kim M, Li J, Reinherz EL, Wagner G, EMBO J 1999 Jun 1;18(11):2941-9. PMID:10357807
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (511 Kb) [Save to disk]
  • Biological Unit Coordinates (1ci5.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 1CI5
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1CI5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CI5 from S2C, [Save to disk]
  • View 1CI5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CI5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CI5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ci5a1, region A:1-95 [Jmol] [rasmolscript] [script source]
  • Fold representative 1ci5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ci5] [1ci5_A]
  • SWISS-PROT database: [P19256]
  • Domain organization of [LFA3_HUMAN] by SWISSPFAM
  • Domain found in 1CI5: [IG ] by SMART
  • Other resources with information on 1CI5
  • Community annotation for 1CI5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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