1D5M date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ACE, ALC, CY1, NAG, NH2 enzyme
related structures by homologous chain: 1CQV, 1D5Z, 1PYW
Gene
Ontology
ChainFunctionProcessComponent
A


B


C
  • toxin activity


    • Primary referencePeptide and peptide mimetic inhibitors of antigen presentation by HLA-DR class II MHC molecules. Design, structure-activity relationships, and X-ray crystal structures., Bolin DR, Swain AL, Sarabu R, Berthel SJ, Gillespie P, Huby NJ, Makofske R, Orzechowski L, Perrotta A, Toth K, Cooper JP, Jiang N, Falcioni F, Campbell R, Cox D, Gaizband D, Belunis CJ, Vidovic D, Ito K, Crowther R, Kammlott U, Zhang X, Palermo R, Weber D, Guenot J, Nagy Z, Olson GL, J Med Chem 2000 Jun 1;43(11):2135-48. PMID:10841792
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (1d5m.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 1D5M
  • CSU: Contacts of Structural Units for 1D5M
  • Likely Quarternary Molecular Structure file(s) for 1D5M
  • Structure Factors (470 Kb)
  • Retrieve 1D5M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D5M from S2C, [Save to disk]
  • Re-refined 1d5m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1D5M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d5m] [1d5m_A] [1d5m_B] [1d5m_C] [1d5m_D]
  • SWISS-PROT database: [P13760] [P01903] [P01552]
  • Domains found in 1D5M: [IGc1] [MHC_II_alpha] [MHC_II_beta ] by SMART

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