OCA Atlas for 1DKI

1DKI

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

SO4

enzyme

related structures

by homologous chain: 1PVJ

Gene
Ontology

Chain	Function	Process	Component
A, D, C, B	toxin activity

Primary reference

Crystal structure of the zymogen form of the group A Streptococcus virulence factor SpeB: an integrin-binding cysteine protease., Kagawa TF, Cooney JC, Baker HM, McSweeney S, Liu M, Gubba S, Musser JM, Baker EN, Proc Natl Acad Sci U S A 2000 Feb 29;97(5):2235-40. PMID:10681429

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (213 Kb) [Save to disk]

Biological Unit Coordinates (1dki.pdb1.gz) 50 Kb

Biological Unit Coordinates (1dki.pdb2.gz) 53 Kb

Biological Unit Coordinates (1dki.pdb3.gz) 58 Kb

Biological Unit Coordinates (1dki.pdb4.gz) 57 Kb

LPC: Ligand-Protein Contacts for 1DKI

CSU: Contacts of Structural Units for 1DKI

Likely Quarternary Molecular Structure file(s) for 1DKI

Structure Factors (1916 Kb)

Retrieve 1DKI in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1DKI from S2C, [Save to disk]

Re-refined 1dki structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1DKI in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dki] [1dki_A] [1dki_B] [1dki_C] [1dki_D]

SWISS-PROT database: [P0C0J0]

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