1EGI Sugar Binding Protein date Feb 15, 2000
title Structure Of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From The Macrophage Mannose Receptor
authors H.Feinberg, S.Park-Snyder, A.R.Kolatkar, C.T.Heise, M.E.Taylor, W.I.Weis
compound source
Molecule: Macrophage Mannose Receptor
Chain: A, B
Fragment: Carbohydrate-Recognition Domain 4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Ompa
symmetry Space Group: C 1 2 1
R_factor 0.212 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.056 38.689 55.025 90.00 98.57 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CA enzyme
note 1EGI is a representative structure
related structures by homologous chain: 1EGG
Primary referenceStructure of a C-type carbohydrate recognition domain from the macrophage mannose receptor., Feinberg H, Park-Snyder S, Kolatkar AR, Heise CT, Taylor ME, Weis WI, J Biol Chem 2000 Jul 14;275(28):21539-48. PMID:10779515
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1egi.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1EGI
  • CSU: Contacts of Structural Units for 1EGI
  • Likely Quarternary Molecular Structure file(s) for 1EGI
  • Structure Factors (184 Kb)
  • Retrieve 1EGI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EGI from S2C, [Save to disk]
  • Re-refined 1egi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1EGI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EGI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EGI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1egia_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1egib_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1egi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1egi_A] [1egi] [1egi_B]
  • SWISS-PROT database: [P22897]
  • Domain organization of [MRC1_HUMAN] by SWISSPFAM
  • Domain found in 1EGI: [CLECT ] by SMART
  • Other resources with information on 1EGI
  • Community annotation for 1EGI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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