1EUB Hydrolase Hydrolase Inhibitor date Apr 14, 2000
title Solution Structure Of The Catalytic Domain Of Human Collagenase-3 (Mmp-13) Complexed To A Potent Non-Peptidic Sulfonamide Inhibitor
authors X.Zhang, N.C.Gonnella, J.Koehn, N.Pathak, V.Ganu, R.Melton, D.Parker, S.I.Hu, K.Y.Nam
compound source
Molecule: Collagenase 3
Chain: A
Fragment: Catalytic Domain
Synonym: Matrix Metalloproteinase-13, Mmp-13
Ec: 3.4.24.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3d-Cd-Cln3
methodSolution NMR
ligand 3MP, CA, HAV, MSB, ZN enzyme Hydrolase E.C.3.4.24 BRENDA
related structures by homologous chain: 1HOV, 1OO9
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the catalytic domain of human collagenase-3 (MMP-13) complexed to a potent non-peptidic sulfonamide inhibitor: binding comparison with stromelysin-1 and collagenase-1., Zhang X, Gonnella NC, Koehn J, Pathak N, Ganu V, Melton R, Parker D, Hu SI, Nam KY, J Mol Biol 2000 Aug 11;301(2):513-24. PMID:10926524
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (929 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1EUB
  • CSU: Contacts of Structural Units for 1EUB
  • Original NMR restraints for 1EUB from PDB
  • Retrieve 1EUB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EUB from S2C, [Save to disk]
  • View 1EUB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EUB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EUB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1euba_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1eub from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1eub_A] [1eub]
  • SWISS-PROT database: [P45452]
  • Domain organization of [MMP13_HUMAN] by SWISSPFAM
  • Domain found in 1EUB: [ZnMc ] by SMART
  • Other resources with information on 1EUB
  • Community annotation for 1EUB at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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