1HOV Hydrolase Hydrolase Inhibitor date Dec 11, 2000
title Solution Structure Of A Catalytic Domain Of Mmp-2 Complexed With Sc-74020
authors Y.Feng, J.J.Likos, L.Zhu, H.Woodward, G.Munie, J.J.Mcdonald, A.M.Stevens, C.P.Howard, G.A.De Crescenzo, D.Welsch, H.S.Shieh W.C.Stallings
compound source
Molecule: Matrix Metalloproteinase-2
Chain: A
Fragment: Catalytic Domain
Ec: 3.4.24.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: W3110-Ii5
Expression_system_vector_type: Reca
methodSolution NMR
ligand CA, I52, ZN enzyme Hydrolase E.C.3.4.24.24 BRENDA
related structures by homologous chain: 1EUB, 1FLS
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and backbone dynamics of the catalytic domain of matrix metalloproteinase-2 complexed with a hydroxamic acid inhibitor., Feng Y, Likos JJ, Zhu L, Woodward H, Munie G, McDonald JJ, Stevens AM, Howard CP, De Crescenzo GA, Welsch D, Shieh HS, Stallings WC, Biochim Biophys Acta 2002 Jul 29;1598(1-2):10-23. PMID:12147339
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (489 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1HOV
  • CSU: Contacts of Structural Units for 1HOV
  • Original NMR restraints for 1HOV from PDB
  • Retrieve 1HOV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HOV from S2C, [Save to disk]
  • View 1HOV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HOV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HOV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hova_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1hov from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hov_A] [1hov]
  • SWISS-PROT database: [P08253]
  • Domain organization of [MMP2_HUMAN] by SWISSPFAM
  • Domain found in 1HOV: [ZnMc ] by SMART
  • Other resources with information on 1HOV
  • Community annotation for 1HOV at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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