1F8A Isomerase date Jun 29, 2000
title Structural Basis For The Phosphoserine-Proline Recognition B Ww Domains
authors M.A.Verdecia, M.E.Bowman, K.P.Lu, T.Hunter, J.P.Noel
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Nima-Interact
Chain: B
Synonym: Pin1
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Y(Sep)Pt(Sep)S Peptide
Chain: C
Engineered: Yes

Synthetic: Yes
Other_details: Solid-Phase Peptide Synthesis
symmetry Space Group: P 21 21 21
R_factor 0.231 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.270 43.903 124.659 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.84 Å
ligand SEP enzyme Isomerase E.C.5.2.1.8 BRENDA
related structures by homologous chain: 1I6C, 1NMW, 1PIN
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructural basis for phosphoserine-proline recognition by group IV WW domains., Verdecia MA, Bowman ME, Lu KP, Hunter T, Noel JP, Nat Struct Biol 2000 Aug;7(8):639-43. PMID:10932246
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (1f8a.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1F8A
  • CSU: Contacts of Structural Units for 1F8A
  • Likely Quarternary Molecular Structure file(s) for 1F8A
  • Structure Factors (194 Kb)
  • Retrieve 1F8A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F8A from S2C, [Save to disk]
  • Re-refined 1f8a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1F8A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F8A
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1F8A, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f8ab1, region B:1-42 [Jmol] [rasmolscript] [script source]
        - Domain d1f8ab2, region B:55-167 [Jmol] [rasmolscript] [script source]
  • Fold representative 1f8a from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f8a] [1f8a_C] [1f8a_B]
  • SWISS-PROT database: [Q13526]
  • Domain organization of [PIN1_HUMAN] by SWISSPFAM
  • Domain found in 1F8A: [WW ] by SMART
  • Other resources with information on 1F8A
  • Community annotation for 1F8A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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