1G6J Gene Regulation, Cell Cycle date Nov 06, 2000
title Structure Of Recombinant Human Ubiquitin In Aot Reverse Mice
authors C.R.Babu, P.F.Flynn, A.J.Wand
compound source
Molecule: Ubiquitin
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pet
Expression_system_plasmid: Pet15
methodSolution NMR
related structures by homologous chain: 1UD7, 1YD8
Primary referenceValidation of protein structure from preparations of encapsulated proteins dissolved in low viscosity fluids., Babu CR, Flynn PF, Wand AJ, J Am Chem Soc 2001 Mar 21;123(11):2691-2. PMID:11456950
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (656 Kb) [Save to disk]
  • Biological Unit Coordinates (1g6j.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1G6J
  • Original NMR restraints for 1G6J from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1G6J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G6J from S2C, [Save to disk]
    • View 1G6J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1G6J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G6J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g6ja_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g6j_A] [1g6j]
  • SWISS-PROT database: [P62988]
  • Domain organization of [UBIQ_HUMAN] by SWISSPFAM
  • Domain found in 1G6J: [UBQ ] by SMART
    • Other resources with information on 1G6J
  • Community annotation for 1G6J at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1G6J from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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