1YD8		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
related structures	by homologous chain: 1F9J, 1G6J
Gene Ontology	Chain Function Process Component H, G
Primary reference	Structural mechanism for ubiquitinated-cargo recognition by the Golgi-localized, {gamma}-ear-containing, ADP-ribosylation-factor-binding proteins., Prag G, Lee S, Mattera R, Arighi CN, Beach BM, Bonifacino JS, Hurley JH, Proc Natl Acad Sci U S A 2005 Feb 15;102(7):2334-2339. Epub 2005 Feb 8. PMID:15701688

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (1yd8.pdb1.gz) 29 Kb Biological Unit Coordinates (1yd8.pdb2.gz) 28 Kb CSU: Contacts of Structural Units for 1YD8 Likely Quarternary Molecular Structure file(s) for 1YD8 Structure Factors (57 Kb) Retrieve 1YD8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YD8 from S2C, [Save to disk] Re-refined 1yd8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YD8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yd8] [1yd8_G] [1yd8_H] [1yd8_U] [1yd8_V] SWISS-PROT database: [Q9NZ52] [P62990] Domain found in 1YD8: [UBQ ] by SMART

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