1GVL Hydrolase date Feb 14, 2002
title Human Prokallikrein 6 (Hk6) Prozyme Proprotease M Proneurosin
authors F.X.Gomis-Ruth, A.Bayes, G.Sotiropoulou, G.Pampalakis, T.Tsetsenis, V.Villegas, F.X.Aviles, M.Coll
compound source
Molecule: Kallikrein 6
Chain: A
Synonym: Human Prokallikrein 6, Protease M, Neurosin, Zyme
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Ppic9
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.000 66.400 71.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.8 Å
related structures by homologous chain: 1L2E
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of human prokallikrein 6 reveals a novel activation mechanism for the kallikrein family., Gomis-Ruth FX, Bayes A, Sotiropoulou G, Pampalakis G, Tsetsenis T, Villegas V, Aviles FX, Coll M, J Biol Chem 2002 Jul 26;277(30):27273-81. PMID:12016211
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1gvl.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 1GVL
  • Likely Quarternary Molecular Structure file(s) for 1GVL
  • Retrieve 1GVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GVL from S2C, [Save to disk]
  • View 1GVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GVL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GVL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gvla_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1gvl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gvl_A] [1gvl]
  • SWISS-PROT database: [Q92876]
  • Domain organization of [KLK6_HUMAN] by SWISSPFAM
  • Domain found in 1GVL: [Tryp_SPc ] by SMART
  • Other resources with information on 1GVL
  • Community annotation for 1GVL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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