1H0C Transferase date Jun 17, 2002
title The Crystal Structure Of Human Alanine:Glyoxylate Aminotrans
authors X.Zhang, C.J.Danpure, S.M.Roe, L.H.Pearl
compound source
Molecule: Serine--Glyoxylate Aminotransferase
Chain: A
Synonym: Agt, Spt, Alanine--Glyoxylate Aminotransferase
Ec: 2.6.1.44, 2.6.1.51
Engineered: Yes
Other_details: Lysine - Pyridoxal Phosphate At A 209
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
symmetry Space Group: P 41 21 2
R_factor 0.231 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.330 90.330 142.010 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand AOA, GOL, PLP enzyme Transferase E.C.2.6.1.44 BRENDA
related structures by homologous chain: 1J04
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of alanine:glyoxylate aminotransferase and the relationship between genotype and enzymatic phenotype in primary hyperoxaluria type 1., Zhang X, Roe SM, Hou Y, Bartlam M, Rao Z, Pearl LH, Danpure CJ, J Mol Biol 2003 Aug 15;331(3):643-52. PMID:12899834
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (1h0c.pdb1.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 1H0C
  • CSU: Contacts of Structural Units for 1H0C
  • Likely Quarternary Molecular Structure file(s) for 1H0C
  • Structure Factors (261 Kb)
  • Retrieve 1H0C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H0C from S2C, [Save to disk]
  • Re-refined 1h0c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H0C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H0C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1H0C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h0ca_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1h0c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h0c] [1h0c_A]
  • SWISS-PROT database: [P21549]
  • Domain organization of [SPYA_HUMAN] by SWISSPFAM
  • Other resources with information on 1H0C
  • Community annotation for 1H0C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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