1J04 Transferase date Oct 30, 2002
title Structural Mechanism Of Enzyme Mistargeting In Hereditary Ki Disease In Vitro
authors X.Zhang, S.Djordjevic, M.Bartlam, S.Ye, Z.Rao, C.J.Danpure
compound source
Molecule: Alanine--Glyoxylate Aminotransferase
Chain: A
Synonym: Serine--Pyruvate Aminotransferase
Ec: 2.6.1.51, 2.6.1.44
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
symmetry Space Group: P 41 21 2
R_factor 0.223 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.491 89.491 142.823 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand AOA, GOL, LLP enzyme Transferase E.C.2.6.1.51 BRENDA
related structures by homologous chain: 1H0C
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural implications of a G170R mutation of alanine:glyoxylate aminotransferase that is associated with peroxisome-to-mitochondrion mistargeting., Djordjevic S, Zhang X, Bartlam M, Ye S, Rao Z, Danpure CJ, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Mar 1;66(Pt, 3):233-6. Epub 2010 Feb 23. PMID:20208150
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (1j04.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (1j04.pdb2.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 1J04
  • CSU: Contacts of Structural Units for 1J04
  • Likely Quarternary Molecular Structure file(s) for 1J04
  • Structure Factors (205 Kb)
  • Retrieve 1J04 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J04 from S2C, [Save to disk]
  • Re-refined 1j04 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1J04 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J04
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1J04, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j04a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1j04 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j04_A] [1j04]
  • SWISS-PROT database: [P21549]
  • Domain organization of [SPYA_HUMAN] by SWISSPFAM
  • Other resources with information on 1J04
  • Community annotation for 1J04 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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