1J3H Transferase date Jan 31, 2003
title Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Subunit
authors P.Akamine, Madhusudan, J.Wu, N.H.Xuong, L.F.Ten Eyck, S.S.Taylor
compound source
Molecule: Camp-Dependent Protein Kinase, Alpha-Catalytic Su
Chain: A, B
Synonym: Pkac-Alpha
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsetb
symmetry Space Group: P 1 21 1
R_factor 0.257 R_Free 0.291
length a length b length c angle alpha angle beta angle gamma
48.776 143.601 62.809 90.00 105.71 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand CME, MPD, SEP, TPO enzyme Transferase E.C. BRENDA
note 1J3H (Molecule of the Month:pdb152)
related structures by homologous chain: 1CMK
A, B

Primary referenceDynamic features of cAMP-dependent protein kinase revealed by apoenzyme crystal structure., Akamine P, Madhusudan, Wu J, Xuong NH, Ten Eyck LF, Taylor SS, J Mol Biol 2003 Mar 14;327(1):159-71. PMID:12614615
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (1j3h.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (1j3h.pdb2.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 1J3H
  • CSU: Contacts of Structural Units for 1J3H
  • Likely Quarternary Molecular Structure file(s) for 1J3H
  • Structure Factors (147 Kb)
  • Retrieve 1J3H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J3H from S2C, [Save to disk]
  • Re-refined 1j3h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1J3H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J3H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1J3H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j3ha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1j3hb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1j3h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j3h] [1j3h_A] [1j3h_B]
  • SWISS-PROT database: [P05132]
  • Domain organization of [KAPCA_MOUSE] by SWISSPFAM
  • Domains found in 1J3H: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 1J3H
  • Community annotation for 1J3H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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