1JGL Immune System date Jun 26, 2001
title Crystal Structure Of Immunoglobulin Fab Fragment Complexed With 17-Beta-Estradiol
authors U.Lamminmaki, J.A.Kankare
compound source
Molecule: Ig Kappa-Chain
Chain: L
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl-1 Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcomb3

Molecule: Ig Gamma-1-Chain
Chain: H
Fragment: Residues 1-215
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl-1 Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcomb3
symmetry Space Group: P 21 21 21
R_factor 0.199 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.207 64.496 165.285 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand EST enzyme
related structures by homologous chain: 1A4J, 1JV5, 1UB6, 1VPO
Primary referenceCrystal structure of a recombinant anti-estradiol Fab fragment in complex with 17beta -estradiol., Lamminmaki U, Kankare JA, J Biol Chem 2001 Sep 28;276(39):36687-94. PMID:11451948
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (1jgl.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 1JGL
  • CSU: Contacts of Structural Units for 1JGL
  • Likely Quarternary Molecular Structure file(s) for 1JGL
  • Structure Factors (232 Kb)
  • Retrieve 1JGL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JGL from S2C, [Save to disk]
  • Re-refined 1jgl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JGL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JGL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JGL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jglh1, region H:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1jglh2, region H:114-213 [Jmol] [rasmolscript] [script source]
        - Domain d1jgll1, region L:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1jgll2, region L:108-213 [Jmol] [rasmolscript] [script source]
  • Fold representative 1jgl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jgl] [1jgl_H] [1jgl_L]
  • SWISS-PROT database: [Q7TS98]
  • Domain organization of [Q7TS98_MOUSE] by SWISSPFAM
  • Domains found in 1JGL: [IG_like] [IGv ] by SMART
  • Other resources with information on 1JGL
  • Community annotation for 1JGL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science