1JOW Cell Cycle Transferase date Jul 31, 2001
title Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin
authors U.Schulze-Gahmen, S.H.Kim
compound source
Molecule: Cyclin Homolog
Chain: A
Synonym: V-Cyclin
Engineered: Yes
Organism_scientific: Saimiriine Herpesvirus 2
Organism_common: Herpesvirus Saimiri
Organism_taxid: 10381
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac Hta Donor Plasmid

Molecule: Cell Division Protein Kinase 6
Chain: B
Fragment: Residues 1-308
Synonym: Cdk6, Serinethreonine-Protein Kinase Plstire
Ec: 2.7.1.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk6
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1 Donor Plasmid
symmetry Space Group: P 65 2 2
R_factor 0.266 R_Free 0.323
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.140 70.140 448.770 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.10 Å
ligand
enzyme Transferase E.C.2.7.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis for CDK6 activation by a virus-encoded cyclin., Schulze-Gahmen U, Kim SH, Nat Struct Biol 2002 Mar;9(3):177-81. PMID:11828325
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (1jow.pdb1.gz) 74 Kb
  • CSU: Contacts of Structural Units for 1JOW
  • Likely Quarternary Molecular Structure file(s) for 1JOW
  • Structure Factors (104 Kb)
  • Retrieve 1JOW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JOW from S2C, [Save to disk]
  • Re-refined 1jow structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JOW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JOW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JOW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jowa2, region A:149-254 [Jmol] [rasmolscript] [script source]
        - Domain d1jowa1, region A:9-148 [Jmol] [rasmolscript] [script source]
        - Domain d1jowb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1jow from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jow_B] [1jow] [1jow_A]
  • SWISS-PROT database: [Q00534] [Q01043]
  • Domain organization of [CDK6_HUMAN] [CGH2_SHV21] by SWISSPFAM
  • Domains found in 1JOW: [CYCLIN] [S_TKc ] by SMART
  • Other resources with information on 1JOW
  • Community annotation for 1JOW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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