1KD1 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CD, CL, K, MG, NA, SPR enzyme
related structures by homologous chain: 1K8A, 1K9M
Gene
Ontology
ChainFunctionProcessComponent
1


2


3


4


C


D


E


F


G


H
  • ribonuclease P activity


    • I


    J


    K


    L


    M


    N


    O


    P


    Q


    R


    S


    T


    U


    V


    W


    X


    Y


    Z


    Primary referenceThe structures of four macrolide antibiotics bound to the large ribosomal subunit., Hansen JL, Ippolito JA, Ban N, Nissen P, Moore PB, Steitz TA, Mol Cell 2002 Jul;10(1):117-28. PMID:12150912
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1963 Kb) [Save to disk]
  • Biological Unit Coordinates (1kd1.pdb1.gz) 1929 Kb
  • LPC: Ligand-Protein Contacts for 1KD1
  • CSU: Contacts of Structural Units for 1KD1
  • Likely Quarternary Molecular Structure file(s) for 1KD1
  • Structure Factors (5209 Kb)
  • Retrieve 1KD1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KD1 from S2C, [Save to disk]
  • Re-refined 1kd1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1KD1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kd1] [1kd1_1] [1kd1_2] [1kd1_3] [1kd1_4] [1kd1_A] [1kd1_B] [1kd1_C] [1kd1_D] [1kd1_E] [1kd1_F] [1kd1_G] [1kd1_H] [1kd1_I] [1kd1_J] [1kd1_K] [1kd1_L] [1kd1_M] [1kd1_N] [1kd1_O] [1kd1_P] [1kd1_Q] [1kd1_R] [1kd1_S] [1kd1_T] [1kd1_U] [1kd1_V] [1kd1_W] [1kd1_X] [1kd1_Y] [1kd1_Z]
  • SWISS-PROT database: [P60617] [P29198] [P22450] [P60618] [P12737] [P12733] [P14123] [P14119] [P12734] [P10970] [P12732] [P14116] [P10972] [P10971] [P20276] [P14121] [P18138] [P12736] [P60619] [P32410] [P22452] [P20279] [P32411] [P12735] [P14124] [P14135] [P12743] [P15825]
  • Domains found in 1KD1: [HhH1] [KOW] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [TRASH ] by SMART

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