1MT6 Transferase date Sep 20, 2002
title Structure Of Histone H3 K4-Specific Methyltransferase Set79 With Adohcy
authors S.A.Jacobs, J.M.Harp, S.Devarakonda, Y.Kim, F.Rastinejad, S.Khorasanizadeh
compound source
Molecule: Set9
Chain: A
Synonym: Histone H3 Lysine 4 Specific Methyltransferase, Set79;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex
symmetry Space Group: I 2 2 2
R_factor 0.226 R_Free 0.263
length a length b length c angle alpha angle beta angle gamma
70.347 76.038 166.284 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand SAH enzyme Transferase E.C. BRENDA
related structures by homologous chain: 1H3I, 1MUF

Primary referenceThe active site of the SET domain is constructed on a knot., Jacobs SA, Harp JM, Devarakonda S, Kim Y, Rastinejad F, Khorasanizadeh S, Nat Struct Biol 2002 Nov;9(11):833-8. PMID:12389038
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1mt6.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1MT6
  • CSU: Contacts of Structural Units for 1MT6
  • Likely Quarternary Molecular Structure file(s) for 1MT6
  • Structure Factors (151 Kb)
  • Retrieve 1MT6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MT6 from S2C, [Save to disk]
  • Re-refined 1mt6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MT6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MT6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MT6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mt6a2, region A:194-337 [Jmol] [rasmolscript] [script source]
        - Domain d1mt6a1, region A:58-193 [Jmol] [rasmolscript] [script source]
  • Fold representative 1mt6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mt6_A] [1mt6]
  • SWISS-PROT database: [Q8WTS6]
  • Domain organization of [SETD7_HUMAN] by SWISSPFAM
  • Domain found in 1MT6: [SET ] by SMART
  • Other resources with information on 1MT6
  • Community annotation for 1MT6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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