1NJI date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CD, CL, CLM, K, MG, NA enzyme
note 1NJI (Molecule of the Month:pdb121)
related structures by homologous chain: 1N8R, 1Q82, 1YJN
Gene
Ontology
ChainFunctionProcessComponent
1


2


3


4


C


D


E


F


G


H
  • ribonuclease P activity


    • I


    J


    K


    L


    M


    N


    O


    P


    Q


    R


    S


    T


    U


    V


    W


    X


    Y


    Z


    Primary referenceStructures of five antibiotics bound at the peptidyl transferase center of the large ribosomal subunit., Hansen JL, Moore PB, Steitz TA, J Mol Biol 2003 Jul 25;330(5):1061-75. PMID:12860128
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1960 Kb) [Save to disk]
  • Biological Unit Coordinates (1nji.pdb1.gz) 1926 Kb
  • LPC: Ligand-Protein Contacts for 1NJI
  • CSU: Contacts of Structural Units for 1NJI
  • Likely Quarternary Molecular Structure file(s) for 1NJI
  • Structure Factors (5621 Kb)
  • Retrieve 1NJI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NJI from S2C, [Save to disk]
  • Re-refined 1nji structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1NJI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nji_S] [1nji_R] [1nji_T] [1nji_U] [1nji] [1nji_1] [1nji_2] [1nji_3] [1nji_4] [1nji_A] [1nji_B] [1nji_C] [1nji_D] [1nji_E] [1nji_F] [1nji_G] [1nji_H] [1nji_I] [1nji_J] [1nji_K] [1nji_L] [1nji_M] [1nji_N] [1nji_O] [1nji_P] [1nji_Q] [1nji_V] [1nji_W] [1nji_X] [1nji_Y] [1nji_Z]
  • SWISS-PROT database: [P60617] [P29198] [P22450] [P60618] [P12737] [P12733] [P14123] [P14119] [P12734] [P10970] [P12732] [P14116] [P10972] [P10971] [P20276] [P14121] [P18138] [P12736] [P60619] [P32410] [P22452] [P20279] [P32411] [P12735] [P14124] [P14135] [P12743] [P15825]
  • Domains found in 1NJI: [HhH1] [KOW] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [TRASH ] by SMART

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