1OIV Protein Transport date Jun 26, 2003
title X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp
authors S.Pasqualato, F.Senic-Matuglia, L.Renault, B.Goud, J.Salamero, J.Cherfils
compound source
Molecule: Ras-Related Protein Rab-11a
Chain: A, B
Fragment: Residues 1-173
Synonym: Rab-11,24kg, Yl8, Rab11a
Engineered: Yes
Other_details: Deletion Mutant Lacking The 43 C-Terminal Residues
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.210 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.349 69.701 108.277 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.98 Å
ligand EDO, GDP, SO4 enzyme
related structures by homologous chain: 1OIW, 1OIX
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structural GDP/GTP cycle of Rab11 reveals a novel interface involved in the dynamics of recycling endosomes., Pasqualato S, Senic-Matuglia F, Renault L, Goud B, Salamero J, Cherfils J, J Biol Chem 2004 Mar 19;279(12):11480-8. Epub 2003 Dec 29. PMID:14699104
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (1oiv.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 1OIV
  • CSU: Contacts of Structural Units for 1OIV
  • Likely Quarternary Molecular Structure file(s) for 1OIV
  • Structure Factors (186 Kb)
  • Retrieve 1OIV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OIV from S2C, [Save to disk]
  • Re-refined 1oiv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OIV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OIV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OIV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oiva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1oivb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1oiv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oiv_A] [1oiv] [1oiv_B]
  • SWISS-PROT database: [P62491]
  • Domain organization of [RB11A_HUMAN] by SWISSPFAM
  • Domain found in 1OIV: [RAB ] by SMART
  • Other resources with information on 1OIV
  • Community annotation for 1OIV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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