1OIW Protein Transport date Jun 26, 2003
title X-Ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas
authors S.Pasqualato, F.Senic-Matuglia, L.Renault, B.Goud, J.Salamero, J.Cherfils
compound source
Molecule: Ras-Related Protein Rab-11a
Chain: A
Fragment: Residues 1-173
Synonym: Rab-11,24kg, Yl8, Rab11a
Engineered: Yes
Mutation: Yes
Other_details: Deletion Mutant Lacking The 43 C-Terminal Residues
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4 2 2
R_factor 0.265 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.726 73.726 125.152 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand GSP, MG enzyme
related structures by homologous chain: 1OIV
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structural GDP/GTP cycle of Rab11 reveals a novel interface involved in the dynamics of recycling endosomes., Pasqualato S, Senic-Matuglia F, Renault L, Goud B, Salamero J, Cherfils J, J Biol Chem 2004 Mar 19;279(12):11480-8. Epub 2003 Dec 29. PMID:14699104
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1oiw.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1OIW
  • CSU: Contacts of Structural Units for 1OIW
  • Likely Quarternary Molecular Structure file(s) for 1OIW
  • Structure Factors (143 Kb)
  • Retrieve 1OIW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OIW from S2C, [Save to disk]
  • Re-refined 1oiw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OIW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OIW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OIW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oiwa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1oiw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oiw_A] [1oiw]
  • SWISS-PROT database: [P62491]
  • Domain organization of [RB11A_HUMAN] by SWISSPFAM
  • Domain found in 1OIW: [RAB ] by SMART
  • Other resources with information on 1OIW
  • Community annotation for 1OIW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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