1OM9	Protein Transport, Signaling Protein	date	Feb 25, 2003
title	Structure Of The Gga1-Appendage In Complex With The P56 Bind Peptide
authors	B.M.Collins, G.J.K.Praefcke, M.S.Robinson, D.J.Owen
compound		source
Molecule: Adp-Ribosylation Factor Binding Protein Gga1 Chain: A, B Fragment: Appendage Domain, Residues 494-639 Of Sws Q9ujy5 Synonym: Gga1-Appendage Domain; Adp-Ribosylation Factor Bin Protein 1; Gamma-Adaptin Related Protein 1; Golgi-Localized Ear-Containing, Arf-Binding Protein 1; Gga1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gga1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Iptg Inducible T7 Rna Polyme Promoter; Expression_system_plasmid: Pmwh6172
Molecule: 15-Mer Peptide Fragment Of P56 Chain: P, Q Engineered: Yes		Synthetic: Yes Other_details: Sequence Occurs Naturally In Homo Sapiens
symmetry	Space Group: P 31 2 1	R_factor 0.213 R_Free 0.262
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.414 61.414 145.008 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
related structures	by homologous chain: 1NA8
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis for binding of accessory proteins by the appendage domain of GGAs., Collins BM, Praefcke GJ, Robinson MS, Owen DJ, Nat Struct Biol 2003 Aug;10(8):607-13. PMID:12858163

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (1om9.pdb1.gz) 25 Kb Biological Unit Coordinates (1om9.pdb2.gz) 25 Kb Biological Unit Coordinates (1om9.pdb3.gz) 48 Kb CSU: Contacts of Structural Units for 1OM9 Likely Quarternary Molecular Structure file(s) for 1OM9 Structure Factors (204 Kb) Retrieve 1OM9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OM9 from S2C, [Save to disk] Re-refined 1om9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OM9 in 3D

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Visual 3D analysis of 1OM9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OM9, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1om9a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1om9b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1om9_Q] [1om9] [1om9_P] [1om9_A] [1om9_B] SWISS-PROT database: [Q7Z6B0] [Q9UJY5] Domain organization of [CCD91_HUMAN] [GGA1_HUMAN] by SWISSPFAM Domain found in 1OM9: [Alpha_adaptinC2 ] by SMART

Other resources with information on 1OM9

Community annotation for 1OM9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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