1OVL Transcription date Mar 26, 2003
title Crystal Structure Of Nurr1 Lbd
authors Z.Wang, J.Liu, N.Walker
compound source
Molecule: Orphan Nuclear Receptor Nurr1 (Mse 414, 496, 511);
Chain: A, D
Synonym: Immediate-Early Response Protein Not, Transcriptionally Inducible Nuclear Receptor;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr4a2 Or Nurr1 Or Tinur Or Not
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet-15b

Molecule: Orphan Nuclear Receptor Nurr1 (Mse 496, 511)
Chain: B, C, E, F
Synonym: Immediate-Early Response Protein Not, Transcriptionally Inducible Nuclear Receptor;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr4a2 Or Nurr1 Or Tinur Or Not
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet-15b
symmetry Space Group: P 31
R_factor 0.217 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.383 80.383 227.370 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand BR, IOD, K, MSE enzyme
related structures by homologous chain: 1YJE
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructure and function of Nurr1 identifies a class of ligand-independent nuclear receptors., Wang Z, Benoit G, Liu J, Prasad S, Aarnisalo P, Liu X, Xu H, Walker NP, Perlmann T, Nature 2003 May 29;423(6939):555-60. PMID:12774125
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk]
  • Biological Unit Coordinates (1ovl.pdb1.gz) 235 Kb
  • LPC: Ligand-Protein Contacts for 1OVL
  • CSU: Contacts of Structural Units for 1OVL
  • Likely Quarternary Molecular Structure file(s) for 1OVL
  • Retrieve 1OVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OVL from S2C, [Save to disk]
  • View 1OVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OVL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OVL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ovla_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ovlb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1ovlc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1ovld_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1ovle_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1ovlf_, region F [Jmol] [rasmolscript] [script source]
  • Fold representative 1ovl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ovl_F] [1ovl_C] [1ovl_B] [1ovl_E] [1ovl] [1ovl_D] [1ovl_A]
  • SWISS-PROT database: [P43354]
  • Domain organization of [NR4A2_HUMAN] by SWISSPFAM
  • Domain found in 1OVL: [HOLI ] by SMART
  • Other resources with information on 1OVL
  • Community annotation for 1OVL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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