1OXD Luminescent Protein date Apr 02, 2003
title Expansion Of The Genetic Code Enables Design Of A Novel "Gol Of Green Fluorescent Proteins
authors J.Hyun Bae, M.Rubini, G.Jung, G.Wiegand, M.H.Seifert, M.K.Azim, J. A.Zumbusch, T.A.Holak, L.Moroder, R.Huber, N.Budisa
compound source
Molecule: Cyan Fluorescent Protein Cfp
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Cfp Marker Plasmid Pwm1009
Organism_taxid: 141850
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.952 62.768 69.519 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.15 Å
ligand CRF enzyme
related structures by homologous chain: 1OXE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceExpansion of the genetic code enables design of a novel "gold" class of green fluorescent proteins., Hyun Bae J, Rubini M, Jung G, Wiegand G, Seifert MH, Azim MK, Kim JS, Zumbusch A, Holak TA, Moroder L, Huber R, Budisa N, J Mol Biol 2003 May 16;328(5):1071-81. PMID:12729742
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1oxd.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 1OXD
  • CSU: Contacts of Structural Units for 1OXD
  • Likely Quarternary Molecular Structure file(s) for 1OXD
  • Retrieve 1OXD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OXD from S2C, [Save to disk]
    • View 1OXD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OXD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1OXD from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OXD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oxda_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oxd_A] [1oxd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1OXD
  • Community annotation for 1OXD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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