1P5J Lyase date Apr 27, 2003
title Crystal Structure Analysis Of Human Serine Dehydratase
authors L.Sun, Y.Liu, Z.Rao
compound source
Molecule: L-Serine Dehydratase
Chain: A
Synonym: Serine Dehydratase
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Liver
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: I 4 2 2
R_factor 0.189 R_Free 0.247
length a length b length c angle alpha angle beta angle gamma
157.436 157.436 59.193 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand PLP enzyme Lyase E.C. BRENDA
related structures by homologous chain: 1PWH

Primary referenceCrystallization and preliminary crystallographic analysis of human serine dehydratase., Sun L, Li X, Dong Y, Yang M, Liu Y, Han X, Zhang X, Pang H, Rao Z, Acta Crystallogr D Biol Crystallogr 2003 Dec;59(Pt 12):2297-9. PMID:14646100
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1p5j.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 1P5J
  • CSU: Contacts of Structural Units for 1P5J
  • Likely Quarternary Molecular Structure file(s) for 1P5J
  • Structure Factors (212 Kb)
  • Retrieve 1P5J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P5J from S2C, [Save to disk]
  • Re-refined 1p5j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1P5J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P5J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1P5J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p5ja_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1p5j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p5j] [1p5j_A]
  • SWISS-PROT database: [P20132]
  • Domain organization of [SDHL_HUMAN] by SWISSPFAM
  • Other resources with information on 1P5J
  • Community annotation for 1P5J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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