OCA Atlas for 1PTJ

1PTJ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GOL, NAP, SND

enzyme

related structures

by homologous chain: 1HZZ, 1U2D

Gene
Ontology

Chain	Function	Process	Component
A, B	NAD(P)+ transhydrogenase (B-...

Primary reference

Interactions between transhydrogenase and thio-nicotinamide Analogues of NAD(H) and NADP(H) underline the importance of nucleotide conformational changes in coupling to proton translocation., Singh A, Venning JD, Quirk PG, van Boxel GI, Rodrigues DJ, White SA, Jackson JB, J Biol Chem 2003 Aug 29;278(35):33208-16. Epub 2003 Jun 5. PMID:12791694

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]

Biological Unit Coordinates (1ptj.pdb1.gz) 139 Kb

LPC: Ligand-Protein Contacts for 1PTJ

CSU: Contacts of Structural Units for 1PTJ

Likely Quarternary Molecular Structure file(s) for 1PTJ

Structure Factors (262 Kb)

Retrieve 1PTJ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1PTJ from S2C, [Save to disk]

Re-refined 1ptj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1PTJ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ptj] [1ptj_A] [1ptj_B] [1ptj_C]

SWISS-PROT database: [Q2RSB2] [Q2RSB4]

Domains found in 1PTJ: [AlaDh_PNT_C] [AlaDh_PNT_N ] by SMART

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