1RL5 Toxin date Nov 25, 2003
title Nmr Structure With Tightly Bound Water Molecule Of Cytotoxin I From Naja Oxiana In Aqueous Solution (Major Form)
authors M.A.Dubinnyi, Y.E.Pustovalova, P.V.Dubovskii, Y.N.Utkin, A.S.Arseniev
compound source
Molecule: Cytotoxin 1
Chain: A
Organism_scientific: Naja Oxiana
Organism_common: Central Asian Cobra
Organism_taxid: 8657
Secretion: Venome
methodSolution NMR
related structures by homologous chain: 1CDT, 1FFJ
  • toxin activity

  • Primary referenceInteraction of three-finger toxins with phospholipid membranes: comparison of S- and P-type cytotoxins., Dubovskii PV, Lesovoy DM, Dubinnyi MA, Konshina AG, Utkin YN, Efremov RG, Arseniev AS, Biochem J 2005 May 1;387(Pt 3):807-15. PMID:15584897
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (320 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1RL5
  • Original NMR restraints for 1RL5 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1RL5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RL5 from S2C, [Save to disk]
  • View 1RL5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RL5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RL5, from MSDmotif at EBI
  • Fold representative 1rl5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rl5_A] [1rl5]
  • SWISS-PROT database: [P01451]
  • Domain organization of [CX1_NAJOX] by SWISSPFAM
  • Other resources with information on 1RL5
  • Community annotation for 1RL5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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