1RPM Receptor date Sep 11, 1997
title Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
authors K.M.V.Hoffmann, N.K.Tonks, D.Barford
compound source
Molecule: Receptor Protein Tyrosine Phosphatase Mu
Chain: A, B
Fragment: Cytosolic Membrane Proximal Catalytic Domain
Synonym: D1
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
symmetry Space Group: P 1 21 1
R_factor 0.195 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.538 36.292 95.381 90.00 95.66 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand
enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe crystal structure of domain 1 of receptor protein-tyrosine phosphatase mu., Hoffmann KM, Tonks NK, Barford D, J Biol Chem 1997 Oct 31;272(44):27505-8. PMID:9346878
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (1rpm.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (1rpm.pdb2.gz) 49 Kb
  • CSU: Contacts of Structural Units for 1RPM
  • Likely Quarternary Molecular Structure file(s) for 1RPM
  • Structure Factors (190 Kb)
  • Retrieve 1RPM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RPM from S2C, [Save to disk]
  • Re-refined 1rpm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RPM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RPM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RPM, from MSDmotif at EBI
  • Genome occurence of 1RPM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rpma_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1rpmb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1rpm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rpm_A] [1rpm] [1rpm_B]
  • SWISS-PROT database: [P28827]
  • Domain organization of [PTPRM_HUMAN] by SWISSPFAM
  • Domain found in 1RPM: [PTPc ] by SMART
  • Other resources with information on 1RPM
  • Community annotation for 1RPM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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