1T5Z Hormone Growth Factor date May 05, 2004
title Crystal Structure Of The Androgen Receptor Ligand Binding Domain (Lbd) With Dht And A Peptide Derived From Its Physiological Coactivator Ara70
authors E.Estebanez-Perpina, J.M.R.Moore, E.Mar, P.Nguyen, E.Delgado- Rodrigues, J.D.Baxter, P.Webb, R.J.Fletterick, R.K.Guy
compound source
Molecule: Androgen Receptor
Chain: A
Fragment: Ar Ligand Binding Domain 669-918
Synonym: Dihydrotestosterone Receptor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ar, Nr3c4, Dhtr
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Receptor Coactivator 4
Chain: B
Synonym: Ncoa-4, 70 Kda Androgen Receptor Coactivator, 70 Kda Ar-Activator, Ret-Activating Protein Ele1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ncoa4, Ara70, Rfg, Ele1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.228 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.680 66.423 68.253 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand DHT BindingDB enzyme
related structures by homologous chain: 1E3G, 1XQ3
Primary referenceThe molecular mechanisms of coactivator utilization in ligand dependent transactivation by the androgen receptor., Estebanez-Perpina E, Moore JM, Mar E, Rodrigues ED, Nguyen P, Baxter JD, Buehrer BM, Webb P, Fletterick RJ, Guy RK, J Biol Chem 2004 Nov 24;. PMID:15563469
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (1t5z.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 1T5Z
  • CSU: Contacts of Structural Units for 1T5Z
  • Likely Quarternary Molecular Structure file(s) for 1T5Z
  • Structure Factors (173 Kb)
  • Retrieve 1T5Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T5Z from S2C, [Save to disk]
  • Re-refined 1t5z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1T5Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1T5Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1T5Z, from MSDmotif at EBI
  • Fold representative 1t5z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t5z_A] [1t5z] [1t5z_B]
  • SWISS-PROT database: [P10275] [Q13772]
  • Domain organization of [ANDR_HUMAN] [NCOA4_HUMAN] by SWISSPFAM
  • Domain found in 1T5Z: [HOLI ] by SMART
  • Other resources with information on 1T5Z
  • Community annotation for 1T5Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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