1TVG Cell Cycle date Jun 29, 2004
title X-Ray Structure Of Human Pp25 Gene Product, Hspc034. Northeast Structural Genomics Target Hr1958.
authors A.P.Kuzin, S.M.Vorobiev, I.Lee, T.B.Acton, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Loc51668 Protein
Chain: A
Synonym: Anaphase-Promoting Complex, Subunit 10 (Apc10), Hr1958;
Engineered: Yes
Other_details: This Protein Is Probably A Mutant Because Asp109 Is Deleted.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.215 R_Free 0.244
length a length b length c angle alpha angle beta angle gamma
70.974 41.617 46.779 90.00 102.19 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CA, SM enzyme
note 1TVG is a representative structure
related structures by homologous chain: 1XPW

Primary referenceImproving NMR protein structure quality by Rosetta refinement: a molecular replacement study., Ramelot TA, Raman S, Kuzin AP, Xiao R, Ma LC, Acton TB, Hunt JF, Montelione GT, Baker D, Kennedy MA, Proteins. 2009 Apr;75(1):147-67. PMID:18816799
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (1tvg.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 1TVG
  • CSU: Contacts of Structural Units for 1TVG
  • Likely Quarternary Molecular Structure file(s) for 1TVG
  • Structure Factors (695 Kb)
  • Retrieve 1TVG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TVG from S2C, [Save to disk]
  • Re-refined 1tvg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TVG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TVG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TVG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tvga_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1tvg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tvg] [1tvg_A]
  • SWISS-PROT database: [Q9Y547]
  • Domain organization of [HSB11_HUMAN] by SWISSPFAM
  • Other resources with information on 1TVG
  • Community annotation for 1TVG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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