1XPW Structural Genomics, Unknown Function date Oct 09, 2004
title Solution Nmr Structure Of Human Protein Hspco34. Northeast Structural Genomics Target Hr1958
authors T.A.Ramelot, R.Xiao, L.C.Ma, T.B.Acton, G.T.Montelione, M.A.Kennedy, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Loc51668 Protein
Chain: A
Synonym: Hspc034
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pp25
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (Lamda De3) Pmgk
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet14
methodSolution NMR
related structures by homologous chain: 1TVG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceImproving NMR protein structure quality by Rosetta refinement: a molecular replacement study., Ramelot TA, Raman S, Kuzin AP, Xiao R, Ma LC, Acton TB, Hunt JF, Montelione GT, Baker D, Kennedy MA, Proteins. 2009 Apr;75(1):147-67. PMID:18816799
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (757 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1XPW
  • Original NMR restraints for 1XPW from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1XPW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XPW from S2C, [Save to disk]
  • View 1XPW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XPW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XPW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xpwa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1xpw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xpw] [1xpw_A]
  • SWISS-PROT database: [Q9Y547]
  • Domain organization of [HSB11_HUMAN] by SWISSPFAM
  • Other resources with information on 1XPW
  • Community annotation for 1XPW at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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