OCA Atlas for 1V15

1V15

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

related structures

by homologous chain: 1BXI, 1PT3

Gene
Ontology

Chain	Function	Process	Component
D, C, B, A

Primary reference

Structure-based analysis of the metal-dependent mechanism of H-N-H endonucleases., Mate MJ, Kleanthous C, J Biol Chem. 2004 Aug 13;279(33):34763-9. Epub 2004 Jun 8. PMID:15190054

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]

Biological Unit Coordinates (1v15.pdb1.gz) 24 Kb

Biological Unit Coordinates (1v15.pdb2.gz) 29 Kb

Biological Unit Coordinates (1v15.pdb3.gz) 29 Kb

Biological Unit Coordinates (1v15.pdb4.gz) 29 Kb

LPC: Ligand-Protein Contacts for 1V15

CSU: Contacts of Structural Units for 1V15

Likely Quarternary Molecular Structure file(s) for 1V15

Structure Factors (176 Kb)

Retrieve 1V15 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1V15 from S2C, [Save to disk]

Re-refined 1v15 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1V15 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1v15] [1v15_A] [1v15_B] [1v15_C] [1v15_D] [1v15_E] [1v15_F] [1v15_G] [1v15_H] [1v15_I] [1v15_J] [1v15_K] [1v15_L]

SWISS-PROT database: [P09883]

Belongs to the channel-forming colicin (colicin) family

according to TCDB.

Domain found in 1V15: [HNHc ] by SMART

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