1VBM		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	SO4, YSA	enzyme
related structures	by homologous chain: 1VBN
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural snapshots of the KMSKS loop rearrangement for amino acid activation by bacterial tyrosyl-tRNA synthetase., Kobayashi T, Takimura T, Sekine R, Kelly VP, Kamata K, Sakamoto K, Nishimura S, Yokoyama S, J Mol Biol. 2005 Feb 11;346(1):105-17. Epub 2004 Dec 15. PMID:15663931

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk] Biological Unit Coordinates (1vbm.pdb1.gz) 105 Kb LPC: Ligand-Protein Contacts for 1VBM CSU: Contacts of Structural Units for 1VBM Likely Quarternary Molecular Structure file(s) for 1VBM Structure Factors (264 Kb) Retrieve 1VBM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VBM from S2C, [Save to disk] Re-refined 1vbm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VBM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vbm_A] [1vbm] [1vbm_B] SWISS-PROT database: [P0AGJ9]

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