1VD2 Transferase date Mar 18, 2004
title Solution Structure Of The Pb1 Domain Of Pkciota
authors Y.Hirano, S.Yoshinaga, M.Yokochi, K.Ogura, Y.Noda, H.Sumimoto, F.Inagaki
compound source
Molecule: Protein Kinase C, Iota Type
Chain: A
Fragment: Pb1 Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pkciota
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
methodSolution NMR
enzyme Transferase E.C. BRENDA
related structures by homologous chain: 1WMH
Primary referenceSolution structure of atypical protein kinase C PB1 domain and its mode of interaction with ZIP/p62 and MEK5., Hirano Y, Yoshinaga S, Ogura K, Yokochi M, Noda Y, Sumimoto H, Inagaki F, J Biol Chem 2004 Jul 23;279(30):31883-90. Epub 2004 May 13. PMID:15143057
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (473 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1VD2
  • Retrieve 1VD2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VD2 from S2C, [Save to disk]
  • View 1VD2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VD2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VD2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vd2a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1vd2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vd2_A] [1vd2]
  • SWISS-PROT database: [P41743]
  • Domain organization of [KPCI_HUMAN] by SWISSPFAM
  • Domain found in 1VD2: [PB1 ] by SMART
  • Other resources with information on 1VD2
  • Community annotation for 1VD2 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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