1WMH Transferase Cell Cycle date Jul 09, 2004
title Crystal Structure Of A Pb1 Domain Complex Of Protein Kinase C Iota And Par6 Alpha
authors Y.Hirano, S.Yoshinaga, N.N.Suzuki, M.Horiuchi, M.Kohjima, R.Takeya, H.Sumimoto, F.Inagaki
compound source
Molecule: Protein Kinase C, Iota Type
Chain: A
Fragment: Pb1 Domain
Synonym: Npkc-Iota, Atypical Protein Kinase C-Lambdaiota, Apkc-Lambdaiota;
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pkciota
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1

Molecule: Partitioning Defective-6 Homolog Alpha
Chain: B
Fragment: Pb1 Domain
Synonym: Par-6 Alpha, Par-6a, Par-6, Par6c, Tax Interaction Protein 40, Tip-40;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Par6alpha
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 21 21 2
R_factor 0.216 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.150 38.363 45.478 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand
enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1VD2
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructure of a Cell Polarity Regulator, a Complex between Atypical PKC and Par6 PB1 Domains., Hirano Y, Yoshinaga S, Takeya R, Suzuki NN, Horiuchi M, Kohjima M, Sumimoto H, Inagaki F, J Biol Chem 2005 Mar 11;280(10):9653-9661. Epub 2004 Dec 7. PMID:15590654
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1wmh.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 1WMH
  • Likely Quarternary Molecular Structure file(s) for 1WMH
  • Structure Factors (218 Kb)
  • Retrieve 1WMH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WMH from S2C, [Save to disk]
  • Re-refined 1wmh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WMH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WMH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1WMH 1WMHA 1WMHB from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WMH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wmha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1wmhb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1wmh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wmh] [1wmh_B] [1wmh_A]
  • SWISS-PROT database: [P41743] [Q9NPB6]
  • Domain organization of [KPCI_HUMAN] [PAR6A_HUMAN] by SWISSPFAM
  • Domain found in 1WMH: [PB1 ] by SMART
  • Other resources with information on 1WMH
  • Community annotation for 1WMH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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