1VEX Cell Adhesion date Apr 06, 2004
title F-Spondin Tsr Domain 4
authors K.Paakkonen, H.Tossavainen, P.Permi, I.Kilpelainen, P.Guntert
compound source
Molecule: F-Spondin
Chain: A
Fragment: F-Spondin Tsr Domain 4
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
related structures by homologous chain: 1LSL
Primary referenceSolution structures of the first and fourth TSR domains of F-spondin., Paakkonen K, Tossavainen H, Permi P, Rakkolainen H, Rauvala H, Raulo E, Kilpelainen I, Guntert P, Proteins. 2006 Aug 15;64(3):665-72. PMID:16736493
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (277 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1VEX
  • Retrieve 1VEX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VEX from S2C, [Save to disk]
  • View 1VEX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VEX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VEX, from MSDmotif at EBI
  • Fold representative 1vex from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vex_A] [1vex]
  • SWISS-PROT database: [P35446]
  • Domain organization of [SPON1_RAT] by SWISSPFAM
  • Domain found in 1VEX: [TSP1 ] by SMART
  • Other resources with information on 1VEX
  • Community annotation for 1VEX at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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