1LSL Cell Adhesion date May 17, 2002
title Crystal Structure Of The Thrombospondin-1 Type 1 Repeats
authors K.Tan, M.Duquette, J.Liu, Y.Dong, R.Zhang, A.Joachimiak, J.Lawler,
compound source
Molecule: Thrombospondin 1
Chain: A
Fragment: Tsp Type 1 Repeats 2 And 3 (Residues 434-546)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Thbs1
Expression_system: Drosophila
Expression_system_common: Fruit Flies
Expression_system_taxid: 7215
Expression_system_cell: S2 Cells
Expression_system_vector_type: Eukaryotic
Expression_system_plasmid: Pmt-Bip-V5-His A
symmetry Space Group: C 1 2 1
R_factor 0.238 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.630 84.410 37.170 90.00 108.67 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand FUC, FUL enzyme
note 1LSL is a representative structure
related structures by homologous chain: 1VEX
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the TSP-1 type 1 repeats: a novel layered fold and its biological implication., Tan K, Duquette M, Liu JH, Dong Y, Zhang R, Joachimiak A, Lawler J, Wang JH, J Cell Biol 2002 Oct 28;159(2):373-82. Epub 2002 Oct 21. PMID:12391027
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1lsl.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1LSL
  • CSU: Contacts of Structural Units for 1LSL
  • Likely Quarternary Molecular Structure file(s) for 1LSL
  • Structure Factors (138 Kb)
  • Retrieve 1LSL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LSL from S2C, [Save to disk]
  • Re-refined 1lsl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LSL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LSL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1LSL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lsla1, region A:416-469 [Jmol] [rasmolscript] [script source]
        - Domain d1lsla2, region A:470-528 [Jmol] [rasmolscript] [script source]
  • Fold representative 1lsl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lsl] [1lsl_A]
  • SWISS-PROT database: [P07996]
  • Domain organization of [TSP1_HUMAN] by SWISSPFAM
  • Domain found in 1LSL: [TSP1 ] by SMART
  • Other resources with information on 1LSL
  • Community annotation for 1LSL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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