OCA Atlas for 1VG8

1VG8

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GNP, MG

enzyme

related structures

by homologous chain: 1KY2, 1VG1

Gene
Ontology

Chain	Function	Process	Component
B, D, C, A		retrograde transport, endoso... early endosome to late endos...

Primary reference

Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease., Rak A, Pylypenko O, Niculae A, Pyatkov K, Goody RS, Alexandrov K, Cell 2004 Jun 11;117(6):749-60. PMID:15186776

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]

Biological Unit Coordinates (1vg8.pdb1.gz) 36 Kb

Biological Unit Coordinates (1vg8.pdb2.gz) 35 Kb

Biological Unit Coordinates (1vg8.pdb3.gz) 35 Kb

Biological Unit Coordinates (1vg8.pdb4.gz) 36 Kb

LPC: Ligand-Protein Contacts for 1VG8

CSU: Contacts of Structural Units for 1VG8

Likely Quarternary Molecular Structure file(s) for 1VG8

Structure Factors (884 Kb)

Retrieve 1VG8 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1VG8 from S2C, [Save to disk]

Re-refined 1vg8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VG8 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vg8] [1vg8_A] [1vg8_B] [1vg8_C] [1vg8_D]

SWISS-PROT database: [P09527]

Domain found in 1VG8: [RAB ] by SMART

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