1Y5L date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 3PH, 6MO, F3S, FME, HEM, MD1, SF4 enzyme
related structures by homologous chain: 1SIW, 1Y5N
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • B
  • electron transfer activity


    • C


    Primary referenceStructural and biochemical characterization of a quinol binding site of escherichia coli nitrate reductase A (NarGHI)., Bertero MG, Rothery RR, Boroumand N, Palak M, Blasco F, Ginet N, Weiner JH, Strynadka NC, J Biol Chem 2004 Dec 22;. PMID:15615728
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (330 Kb) [Save to disk]
  • Biological Unit Coordinates (1y5l.pdb1.gz) 321 Kb
  • Biological Unit Coordinates (1y5l.pdb2.gz) 634 Kb
  • LPC: Ligand-Protein Contacts for 1Y5L
  • CSU: Contacts of Structural Units for 1Y5L
  • Likely Quarternary Molecular Structure file(s) for 1Y5L
  • Structure Factors (810 Kb)
  • Retrieve 1Y5L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y5L from S2C, [Save to disk]
  • Re-refined 1y5l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1Y5L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y5l] [1y5l_A] [1y5l_B] [1y5l_C]
  • SWISS-PROT database: [P09152] [P11349] [P11350]
  • Belongs to the prokaryotic molybdopterin-containing oxidoreductase (pmo) family according to TCDB.
  • Domain found in 1Y5L: [Molybdop_Fe4S4 ] by SMART

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