OCA Atlas for 1YFJ

1YFJ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, CL, SAH

enzyme

related structures

by homologous chain: 1Q0S

Gene
Ontology

Chain	Function	Process	Component
B, A, E, F, C, D

Primary reference

Transition from nonspecific to specific DNA interactions along the substrate-recognition pathway of dam methyltransferase., Horton JR, Liebert K, Hattman S, Jeltsch A, Cheng X, Cell 2005 May 6;121(3):349-61. PMID:15882618

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (307 Kb) [Save to disk]

Biological Unit Coordinates (1yfj.pdb1.gz) 60 Kb

Biological Unit Coordinates (1yfj.pdb2.gz) 60 Kb

Biological Unit Coordinates (1yfj.pdb3.gz) 60 Kb

Biological Unit Coordinates (1yfj.pdb4.gz) 56 Kb

Biological Unit Coordinates (1yfj.pdb5.gz) 53 Kb

Biological Unit Coordinates (1yfj.pdb6.gz) 32 Kb

LPC: Ligand-Protein Contacts for 1YFJ

CSU: Contacts of Structural Units for 1YFJ

Likely Quarternary Molecular Structure file(s) for 1YFJ

Retrieve 1YFJ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1YFJ from S2C, [Save to disk]

View 1YFJ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yfj_6] [1yfj_7] [1yfj_8] [1yfj_9] [1yfj_A] [1yfj_B] [1yfj_C] [1yfj_D] [1yfj_E] [1yfj_F] [1yfj] [1yfj_0] [1yfj_1] [1yfj_2] [1yfj_3] [1yfj_4] [1yfj_5]

SWISS-PROT database: [P04392]

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