1YIJ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 1MA, CD, CL, K, MG, NA, OMG, OMU, PSU, TEL, UR3 enzyme
related structures by homologous chain: 1YHQ, 1YI2
Gene
Ontology
ChainFunctionProcessComponent
1


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A


B


C


D


E


F
  • ribonuclease P activity


    • G


    H


    I


    J


    K


    L


    M


    N


    O


    P


    Q


    R


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    U


    V


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    Primary referenceStructures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance., Tu D, Blaha G, Moore PB, Steitz TA, Cell. 2005 Apr 22;121(2):257-70. PMID:15851032
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1975 Kb) [Save to disk]
  • Biological Unit Coordinates (1yij.pdb1.gz) 1940 Kb
  • LPC: Ligand-Protein Contacts for 1YIJ
  • CSU: Contacts of Structural Units for 1YIJ
  • Likely Quarternary Molecular Structure file(s) for 1YIJ
  • Structure Factors (10897 Kb)
  • Retrieve 1YIJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YIJ from S2C, [Save to disk]
  • Re-refined 1yij structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YIJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yij] [1yij_0] [1yij_1] [1yij_2] [1yij_3] [1yij_9] [1yij_A] [1yij_B] [1yij_C] [1yij_D] [1yij_E] [1yij_F] [1yij_G] [1yij_H] [1yij_I] [1yij_J] [1yij_K] [1yij_L] [1yij_M] [1yij_N] [1yij_O] [1yij_P] [1yij_Q] [1yij_R] [1yij_S] [1yij_T] [1yij_U] [1yij_V] [1yij_W] [1yij_X] [1yij_Y] [1yij_Z]
  • SWISS-PROT database: [P60617] [P14122] [P29198] [P22450] [P60618] [P12737] [P12733] [P14123] [P14119] [P12734] [P10970] [P12732] [P14116] [P10972] [P10971] [P20276] [P14121] [P18138] [P12736] [P60619] [P32410] [P22452] [P20279] [P32411] [P12735] [P14124] [P14135] [P12743] [P15825]
  • Domains found in 1YIJ: [HhH1] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [TRASH ] by SMART

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