1YIT date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 004, 1MA, CD, CL, DBB, K, MEA, MG, MHV, MHW, NA, OMG, OMU, PSU, UR3, VIR enzyme
related structures by homologous chain: 1M90, 1YI2, 1YJW
Gene
Ontology
ChainFunctionProcessComponent
1


2


3


A


B


C


D


E


F
  • ribonuclease P activity


    • G


    H


    I


    J


    K


    L


    M


    N


    O


    P


    Q


    R


    S


    T


    U


    V


    W


    X


    Y


    Z


    Primary referenceStructures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance., Tu D, Blaha G, Moore PB, Steitz TA, Cell. 2005 Apr 22;121(2):257-70. PMID:15851032
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1802 Kb) [Save to disk]
  • Biological Unit Coordinates (1yit.pdb1.gz) 1777 Kb
  • LPC: Ligand-Protein Contacts for 1YIT
  • CSU: Contacts of Structural Units for 1YIT
  • Likely Quarternary Molecular Structure file(s) for 1YIT
  • Structure Factors (3260 Kb)
  • Retrieve 1YIT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YIT from S2C, [Save to disk]
  • Re-refined 1yit structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YIT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yit] [1yit_0] [1yit_1] [1yit_2] [1yit_3] [1yit_8] [1yit_9] [1yit_A] [1yit_B] [1yit_C] [1yit_D] [1yit_E] [1yit_F] [1yit_G] [1yit_H] [1yit_I] [1yit_J] [1yit_K] [1yit_L] [1yit_M] [1yit_N] [1yit_O] [1yit_P] [1yit_Q] [1yit_R] [1yit_S] [1yit_T] [1yit_U] [1yit_V] [1yit_W] [1yit_X] [1yit_Y] [1yit_Z]
  • SWISS-PROT database: [P60617] [P14122] [P29198] [P22450] [P60618] [P12737] [P12733] [P14123] [P14119] [P12734] [P10970] [P12732] [P14116] [P10972] [P10971] [P20276] [P14121] [P18138] [P12736] [P60619] [P32410] [P22452] [P20279] [P32411] [P12735] [P14124] [P14135] [P12743] [P15825]
  • Domains found in 1YIT: [HhH1] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [TRASH ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science