1YQM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 7GU, CA enzyme
related structures by homologous chain: 1YQK, 1YQR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA., Banerjee A, Yang W, Karplus M, Verdine GL, Nature. 2005 Mar 31;434(7033):612-8. PMID:15800616
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1yqm.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 1YQM
  • CSU: Contacts of Structural Units for 1YQM
  • Likely Quarternary Molecular Structure file(s) for 1YQM
  • Structure Factors (146 Kb)
  • Retrieve 1YQM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YQM from S2C, [Save to disk]
  • Re-refined 1yqm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YQM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yqm] [1yqm_A] [1yqm_B] [1yqm_C]
  • SWISS-PROT database: [O15527]
  • Domain found in 1YQM: [ENDO3c ] by SMART

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