1YUC Transcription Regulation date Feb 13, 2005
title Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1, Bo Phospholipid And A Fragment Of Human Shp
authors E.A.Ortlund, L.Yoonkwang, I.H.Solomon, J.M.Hager, R.Safi, Y.Choi, A.Tripathy, C.R.H.Raetz, D.P.Mcdonnell, D.D.Moore, M.R.Redinbo
compound source
Molecule: Orphan Nuclear Receptor Nr5a2
Chain: A, B
Fragment: Ligand Binding Domain
Synonym: Alpha-1-Fetoprotein Transcription Factor; Hepatocy Transcription Factor; B1-Binding Factor; Hb1f; Cyp7a Promot Factor; Liver Receptor Homologue 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr5a2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmalch10t

Molecule: Nuclear Receptor 0b2
Chain: C, D
Fragment: Nr Box1
Synonym: Orphan Nuclear Receptor Shp; Small Heterodimer Par
Engineered: Yes

Synthetic: Yes
Other_details: Sequence Occurs Natuarlly In Homo Sapiens
symmetry Space Group: P 1 21 1
R_factor 0.217 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.670 59.640 73.240 90.00 100.69 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand EPH, GOL enzyme
related structures by homologous chain: 1PK5, 1YP0
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceModulation of human nuclear receptor LRH-1 activity by phospholipids and SHP., Ortlund EA, Lee Y, Solomon IH, Hager JM, Safi R, Choi Y, Guan Z, Tripathy A, Raetz CR, McDonnell DP, Moore DD, Redinbo MR, Nat Struct Mol Biol 2005 Feb 22;. PMID:15723037
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (1yuc.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (1yuc.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (1yuc.pdb3.gz) 90 Kb
  • Biological Unit Coordinates (1yuc.pdb4.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 1YUC
  • CSU: Contacts of Structural Units for 1YUC
  • Likely Quarternary Molecular Structure file(s) for 1YUC
  • Structure Factors (581 Kb)
  • Retrieve 1YUC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YUC from S2C, [Save to disk]
  • Re-refined 1yuc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YUC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YUC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1YUC, from MSDmotif at EBI
  • Fold representative 1yuc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yuc_C] [1yuc_A] [1yuc_D] [1yuc_B] [1yuc]
  • SWISS-PROT database: [Q15466] [O00482]
  • Domain organization of [NR0B2_HUMAN] [NR5A2_HUMAN] by SWISSPFAM
  • Domain found in 1YUC: [HOLI ] by SMART
  • Other resources with information on 1YUC
  • Community annotation for 1YUC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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