1YY6 Hydrolase date Feb 23, 2005
title The Crystal Structure Of The N-Terminal Domain Of Hauspusp7 With An Ebna1 Peptide
authors V.Saridakis, Y.Sheng, F.Sarkari, M.Holowaty, K.Shire, T.Nguyen, R. J.Liao, W.Lee, A.M.Edwards, C.H.Arrowsmith, L.Frappier
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 7
Chain: A
Synonym: Ubiquitin Thiolesterase 7, Ubiquitin-Specific Proc Protease 7, Deubiquitinating Enzyme 7, Herpesvirus Associat Ubiquitin-Specific Protease, Usp7, Hausp;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp7, Hausp
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Epstein-Barr Nuclear Antigen-1
Chain: B
Synonym: Ebna1
Engineered: Yes
Other_details: Usp7 Binding Peptide

Synthetic: Yes
Other_details: The Sequence Of The Peptide Can Be Found Nat Epstein-Barr Virus
symmetry Space Group: P 41
R_factor 0.198 R_Free 0.230
length a length b length c angle alpha angle beta angle gamma
70.050 70.050 45.930 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand NA enzyme Hydrolase E.C. BRENDA
Primary referenceStructure of the p53 binding domain of HAUSP/USP7 bound to Epstein-Barr nuclear antigen 1 implications for EBV-mediated immortalization., Saridakis V, Sheng Y, Sarkari F, Holowaty MN, Shire K, Nguyen T, Zhang RG, Liao J, Lee W, Edwards AM, Arrowsmith CH, Frappier L, Mol Cell. 2005 Apr 1;18(1):25-36. PMID:15808506
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1yy6.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1YY6
  • CSU: Contacts of Structural Units for 1YY6
  • Likely Quarternary Molecular Structure file(s) for 1YY6
  • Structure Factors (191 Kb)
  • Retrieve 1YY6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YY6 from S2C, [Save to disk]
  • Re-refined 1yy6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YY6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YY6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1YY6, from MSDmotif at EBI
  • Fold representative 1yy6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yy6_A] [1yy6_B] [1yy6]
  • SWISS-PROT database: [P03211] [Q93009]
  • Domain organization of [EBNA1_EBVB9] [UBP7_HUMAN] by SWISSPFAM
  • Domain found in 1YY6: [MATH ] by SMART
  • Other resources with information on 1YY6
  • Community annotation for 1YY6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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