1YYM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand EDO, IPA, MPT, NAG, VLM enzyme
note 1YYM is a representative structure
related structures by homologous chain: 1KCU, 1RZJ, 1TJI, 1TZG
Gene
Ontology
ChainFunctionProcessComponent
P, G


Primary referenceScorpion-toxin mimics of CD4 in complex with human immunodeficiency virus gp120 crystal structures, molecular mimicry, and neutralization breadth., Huang CC, Stricher F, Martin L, Decker JM, Majeed S, Barthe P, Hendrickson WA, Robinson J, Roumestand C, Sodroski J, Wyatt R, Shaw GM, Vita C, Kwong PD, Structure. 2005 May;13(5):755-68. PMID:15893666
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk]
  • Biological Unit Coordinates (1yym.pdb1.gz) 131 Kb
  • Biological Unit Coordinates (1yym.pdb2.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 1YYM
  • CSU: Contacts of Structural Units for 1YYM
  • Likely Quarternary Molecular Structure file(s) for 1YYM
  • Structure Factors (1255 Kb)
  • Retrieve 1YYM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YYM from S2C, [Save to disk]
  • Re-refined 1yym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YYM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yym] [1yym_G] [1yym_H] [1yym_L] [1yym_M] [1yym_P] [1yym_Q] [1yym_R] [1yym_S]
  • SWISS-PROT database: [P35961]
  • Domains found in 1YYM: [IG_like] [IGv ] by SMART

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