1ZDN date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NA enzyme
Primary referenceA human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen., Sheng Y, Hong JH, Doherty R, Srikumar T, Shloush J, Avvakumov GV, Walker JR, Xue S, Neculai D, Wan JW, Kim SK, Arrowsmith CH, Raught B, Dhe-Paganon S, Mol Cell Proteomics. 2012 Aug;11(8):329-41. Epub 2012 Apr 10. PMID:22496338
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1zdn.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (1zdn.pdb2.gz) 25 Kb
  • Biological Unit Coordinates (1zdn.pdb3.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1ZDN
  • CSU: Contacts of Structural Units for 1ZDN
  • Likely Quarternary Molecular Structure file(s) for 1ZDN
  • Structure Factors (192 Kb)
  • Retrieve 1ZDN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZDN from S2C, [Save to disk]
  • Re-refined 1zdn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1ZDN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zdn_A] [1zdn_B] [1zdn]
  • SWISS-PROT database: [Q16763]
  • Domain found in 1ZDN: [UBCc ] by SMART

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