1ZVM Hydrolase date Jun 02, 2005
title Crystal Structure Of Human Cd38: Cyclic-Adp-Ribosyl Syntheta Glycohydrolase
authors W.Shi, T.Yang, S.C.Almo, V.L.Schramm, A.Sauve
compound source
Molecule: Adp-Ribosyl Cyclase 1
Chain: A, B, C, D
Synonym: Cyclic Adp-Ribose Hydrolase 1, Cadpr Hydrolase 1, Differentiation Antigen Cd38, T10, Acute Lymphoblastic Leuk Antigen Cd38;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd38
Expression_system: Pichia
Expression_system_taxid: 4919
Other_details: The Biologically Significant Dimer May Not B In The Crystal Structure
symmetry Space Group: P 2 2 21
R_factor 0.228 R_Free 0.270
length a length b length c angle alpha angle beta angle gamma
114.439 115.704 98.441 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand SO4 enzyme Hydrolase E.C. BRENDA
A, D, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (1zvm.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (1zvm.pdb2.gz) 44 Kb
  • Biological Unit Coordinates (1zvm.pdb3.gz) 45 Kb
  • Biological Unit Coordinates (1zvm.pdb4.gz) 44 Kb
  • Biological Unit Coordinates (1zvm.pdb5.gz) 86 Kb
  • Biological Unit Coordinates (1zvm.pdb6.gz) 84 Kb
  • Biological Unit Coordinates (1zvm.pdb7.gz) 86 Kb
  • Biological Unit Coordinates (1zvm.pdb8.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 1ZVM
  • CSU: Contacts of Structural Units for 1ZVM
  • Likely Quarternary Molecular Structure file(s) for 1ZVM
  • Structure Factors (393 Kb)
  • Retrieve 1ZVM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZVM from S2C, [Save to disk]
  • Re-refined 1zvm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZVM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZVM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ZVM, from MSDmotif at EBI
  • Fold representative 1zvm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zvm_C] [1zvm_B] [1zvm] [1zvm_D] [1zvm_A]
  • SWISS-PROT database: [P28907]
  • Domain organization of [CD38_HUMAN] by SWISSPFAM
  • Other resources with information on 1ZVM
  • Community annotation for 1ZVM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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